Richard Scott, 19, was charged Thursday with rape after an investigation by the Atchison Police Department.
Atchison police were informed of an incident that Atchison Police Chief Mike Wilson said occurred at an Atchison residence in October 2013.
Police were given information on the case last week by the Kansas Department of Child and Family Services.
Wilson said Scott was 18 at the time of the alleged incident. He remains in police custody.